> head(PlantGrowth) weight group 1 4.17 ctrl 2 5.58 ctrl 3 5.18 ctrl 4 6.11 ctrl 5 4.50 ctrl 6 4.61 ctrl > levels(PlantGrowth$group) [1] "ctrl" "trt1" "trt2" > m = aov(weight ~ group, data = PlantGrowth) > summary(m) Df Sum Sq Mean Sq F value Pr(>F) group 2 3.766 1.8832 4.846 0.0159 * Residuals 27 10.492 0.3886 --- Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 > install.packages("DescTools") > library(DescTools) > PostHocTest(m, method='bonferroni') Posthoc multiple comparisons of means : Bonferroni 95% family-wise confidence level $group diff lwr.ci upr.ci pval trt1-ctrl -0.371 -1.0825786 0.3405786 0.5832 trt2-ctrl 0.494 -0.2175786 1.2055786 0.2630 trt2-trt1 0.865 0.1534214 1.5765786 0.0134 * --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 PostHocTest(m, method='lsd') # Fisher's LSD PostHocTest(m, method='hsd') # Tuckey's HSD PostHocTest(m, method='scheffe') # Scheffe's method